Publications

(see here the most updated list):

2022

Giordano A, Domingo MS, Quadrana L, Pujol M, Martín-Hernández AM, Garcia-Mas J. CRISPR/Cas9 gene editing uncovers the role of CTR1 and ROS1 in melon fruit ripening and epigenetic regulation. J Exp Bot. 2022 Apr 8:erac148. doi: 10.1093/jxb/erac148.

Sasaki T, Ro K, Caillieux E, Manabe R, Bohl-Viallefond G, Baduel P, Colot V, Kakutani T, Quadrana L. Fast co-evolution of anti-silencing systems shapes the invasiveness of Mu-like DNA transposons in eudicots. EMBO J. 2022 e110070. doi: https://doi.org/10.15252/embj.2021110070.

2021

Baduel P, Leduque B, Ignace A, Gy I, Gil Jr J , Loudet O, Colot V, Quadrana L. Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana. Genome Biol. 2021 May 6;22(1):138. doi: 10.1186/s13059-021-02348-5.

Baduel P, Quadrana L. Jumpstarting evolution: How transposition can facilitate adaptation to rapid environmental changes. Curr Opin Plant Biol. 2021 Apr 28;61:102043. doi: 10.1016/j.pbi.2021.102043.

Quadrana L, Silveira AB, Caillieux E, Colot V. Detection of Transposable Element Insertions in Arabidopsis Using Sequence Capture. Methods Mol Biol. 2021;2250:141-155. doi: 10.1007/978-1-0716-1134-0_14.

Baduel P, Quadrana L, Colot V. Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data. Methods Mol Biol. 2021;2250:157-169. doi: 10.1007/978-1-0716-1134-0_15.

Rougée M, Quadrana L, Zervudacki J, Hure V, Colot V, Navarro L, Deleris A. Polycomb mutant partially suppresses DNA hypomethylation-associated phenotypes in Arabidopsis. Life Sci Alliance. 2020 Dec 21;4(2):e202000848. doi: 10.26508/lsa.202000848.

2020

Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez-Gómez JM, Colot V, Quadrana L. The impact of transposable elements on tomato diversity. Nat Commun. 2020 Aug 13;11(1):4058. doi: 10.1038/s41467-020-17874-2.

Quadrana L.The contribution of transposable elements to transcriptional novelty in plants: the FLC affair. Transcription. 2020 Aug 12:1-7. doi: 10.1080/21541264.2020.1803031.

Van Dooren TJM, Silveira AB, Gilbault E, Jiménez-Gómez JM, Martin A, Bach L, Tisné S, Quadrana L, Loudet O, Colot V. Mild drought in the vegetative stage induces phenotypic, gene expression and DNA methylation plasticity in Arabidopsis but no transgenerational effects. J. Exp. Bot. 2020 Mar 13. pii: eraa132. doi: 10.1093/jxb/eraa132.

2019

Baduel P, Quadrana L, Hunter B, Bomblies K, Colot V. Relaxed purifying selection in autopolyploids drives transposable element over-accumulation which provides variants for local adaptation. Nat Commun. 2019 Dec 20;10(1):5818. doi: 10.1038/s41467-019-13730-0.

Quadrana L Etcheverry M, Gilly A, Caillieux E, Madoui MA, Guy J, Bortolini Silveira A, Engelen S, Baillet V, Wincker P, Aury JM, Colot V. Transposition favors the generation of large effect mutations that may facilitate rapid adaption. Nat Commun. 2019 Jul 31;10(1):3421. doi: 10.1038/s41467-019-11385-5.

Legrand S, Caron T, Maumus F, Schvartzman S, Quadrana L, Durand E, Gallina S, Pauwels M, Mazoyer C, Huyghe L, Colot V, Hanikenne M, Castric V. Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes. Mob DNA. 2019 Jul 17;10:30. doi: 10.1186/s13100-019-0171-6. eCollection 2019.

2018

Bermúdez L, Del Pozo T, Silvestre Lira B, de Godoy F, Boos I, Romanò C, Previtali V, Almeida J, Bréhélin C, Asis R, Quadrana L, Demarco D, Alseekh S, Salinas Gamboa R, Pérez-Flores L, Dominguez PG, Rothan C, Fernie AR, González M, Stocker A, Hemmerle A, Clausen MH, Carrari F, Rossi M. A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants. Plant Cell Physiol. 2018 Nov 1;59(11):2188-2203.

2016

Quadrana L, Colot V. Plant Transgenerational Epigenetics. Annu Rev Genet. 2016 Nov 23;50:467-491. Epub 2016 Oct 6. Review. PubMed PMID: 27732791.

Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V. The Arabidopsis thaliana mobilome and its impact at the species level. Elife. 2016 Jun 3;5. pii: e15716. doi: 10.7554/eLife.15716.

2014

Gilly A, Etcheverry M, Madoui MA, Guy J, Quadrana L, Alberti A, Martin A, Heitkam T, Engelen S, Labadie K, Le Pen J, Wincker P, Colot V, Aury JM. TE-Tracker: systematic identification of transposition events through whole-genome resequencing. BMC Bioinformatics. 2014 Nov 19;15:377. doi: 10.1186/s12859-014-0377-z.

Quadrana L, Almeida J, Asís R, Duffy T, Dominguez PG, Bermúdez L, Conti G, Corrêa da Silva JV, Peralta IE, Colot V, Asurmendi S, Fernie AR, Rossi M, Carrari F. Natural occurring epialleles determine vitamin E accumulation in tomato fruits. Nat Commun. 2014 Jun 26;5:3027. doi: 10.1038/ncomms5027.

Bermúdez L, de Godoy F, Baldet P, Demarco D, Osorio S, Quadrana L, Almeida J, Asis R, Gibon Y, Fernie AR, Rossi M, Carrari F. Silencing of the tomato sugar partitioning affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism. Plant J. 2014 Mar;77(5):676-87. doi: 10.1111/tpj.12418.

2013

Quadrana L, Almeida J, Otaiza SN, Duffy T, Corrêa da Silva JV, de Godoy F, Asís R, Bermúdez L, Fernie AR, Carrari F, Rossi M. Transcriptional regulation of tocopherol biosynthesis in tomato. Plant Mol Biol. 2013 Feb;81(3):309-25. doi: 10.1007/s11103-012-0001-4.

2012

Pelisch F, Khauv D, Risso G, Stallings-Mann M, Blaustein M, Quadrana L, Radisky DC, Srebrow A. Involvement of hnRNP A1 in the matrix metalloprotease-3-dependent regulation of Rac1 pre-mRNA splicing. J Cell Biochem. 2012 Jul;113(7):2319-29. doi: 10.1002/jcb.24103.

2011

Quadrana L, Rodriguez MC, López M, Bermúdez L, Nunes-Nesi A, Fernie AR, Descalzo A, Asis R, Rossi M, Asurmendi S, Carrari F. Coupling virus-induced gene silencing to exogenous green fluorescence protein expression provides a highly efficient system for functional genomics in Arabidopsis and across all stages of tomato fruit development. Plant Physiol. 2011 Jul;156(3):1278-91. doi: 10.1104/pp.111.177345.

Almeida J, Quadrana L, Asís R, Setta N, de Godoy F, Bermúdez L, Otaiza SN, Corrêa da Silva JV, Fernie AR, Carrari F, Rossi M. Genetic dissection of vitamin E biosynthesis in tomato. J Exp Bot. 2011 Jul;62(11):3781-98. doi: 10.1093/jxb/err055.

2009

Blaustein M, Quadrana L, Risso G, Mata Mde L, Pelisch F, Srebrow A. SF2/ASF regulates proteomic diversity by affecting the balance between translation initiation mechanisms. J Cell Biochem. 2009 Jul 1;107(4):826-33. doi: 10.1002/jcb.22181.

2005

Blaustein M, Pelisch F, Tanos T, Muñoz MJ, Wengier D, Quadrana L, Sanford JR, Muschietti JP, Kornblihtt AR, Cáceres JF, Coso OA, Srebrow A. Concerted regulation of nuclear and cytoplasmic activities of SR proteins by AKT. Nat Struct Mol Biol. 2005 Dec;12(12):1037-44.